API Docs

• motion_correction package
  • Subpackages
    • motion_correction.desktop package
      • Submodules
      • motion_correction.desktop.flim_aligner module
      • motion_correction.desktop.utility module
      • Module contents
    • motion_correction.image_registration package
      • Subpackages
      • Submodules
      • motion_correction.image_registration.chi2_shifts module
      • motion_correction.image_registration.conftest module
      • motion_correction.image_registration.cross_correlation_shifts module
      • motion_correction.image_registration.iterative_zoom module
      • motion_correction.image_registration.register_images module
      • motion_correction.image_registration.version module
      • Module contents
    • motion_correction.pyimof package
      • Submodules
      • motion_correction.pyimof.display module
      • motion_correction.pyimof.io module
      • motion_correction.pyimof.solvers module
      • motion_correction.pyimof.util module
      • Module contents
  • Submodules
  • motion_correction.algorithms module
    • Morphic
      • Morphic.align()
      • Morphic.align_morphic_cpu()
      • Morphic.align_morphic_gpu()
    • OpticalILK
      • OpticalILK.align()
    • OpticalPoly
      • OpticalPoly.align()
    • OpticalTVL1
      • OpticalTVL1.align()
    • Phase
      • Phase.align()
  • motion_correction.motion_correction module
    • CorrectionResults
      • CorrectionResults.combined_transforms
      • CorrectionResults.corrected_intensity_data_stack
      • CorrectionResults.global_corrected_intensity_data_stack
      • CorrectionResults.global_transforms
      • CorrectionResults.local_transforms
      • CorrectionResults.metrics
    • Metric
      • Metric.corrected
      • Metric.global_corrected
      • Metric.original
    • Metrics
      • Metrics.mse
      • Metrics.ncc
      • Metrics.nrm
      • Metrics.spm
      • Metrics.ssi
    • apply_correction_flim()
    • calculate_correction()
    • get_aggregated_intensity_image()
    • get_intensity_stack()
  • motion_correction.pqreader module
    • load_ptfile()
    • plot_sequence_images()
  • motion_correction.pqwriter module
    • write_pt3()
  • Module contents